diff --git a/bauh/view/qt/thread.py b/bauh/view/qt/thread.py
index 32b8c62f..d107602f 100644
--- a/bauh/view/qt/thread.py
+++ b/bauh/view/qt/thread.py
@@ -364,7 +364,7 @@ class UpgradeSelected(AsyncAction):
             self.pkgs = None
             return
 
-        to_update = [pkg for pkg in self.pkgs if pkg.model.update and pkg.update_checked]
+        to_update = [pkg for pkg in self.pkgs if pkg.model.update and not pkg.model.is_update_ignored() and pkg.update_checked]
 
         if len(to_update) > 1:
             self.disable_progress_controll()
diff --git a/bauh/view/qt/window.py b/bauh/view/qt/window.py
index ca76e1e8..fd50b374 100755
--- a/bauh/view/qt/window.py
+++ b/bauh/view/qt/window.py
@@ -1273,6 +1273,12 @@ class ManageWindow(QWidget):
         if res['success']:
             if self.ref_checkbox_updates.isVisible() and self.filter_updates:
                 self.table_apps.model().removeRow(res['pkg'].table_index)
+                del self.pkgs[res['pkg'].table_index]
+
+                if self.pkgs:
+                    for idx, p in enumerate(self.pkgs):
+                        p.table_index = idx
+
             else:
                 self.table_apps.update_package(res['pkg'], change_update_col=True)